External Blast: Click to BlastX or BlastN at the NCBI or BlastX / BlastN here
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
(1 letters)
Database: ../nannochloropsis/454AllContigs.fna
14,461 sequences; 30,144,854 total letters
***** No hits found ******
Database: ../nannochloropsis/454AllContigs.fna
Posted date: Dec 23, 2010 5:06 PM
Number of letters in database: 30,144,854
Number of sequences in database: 14,461
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 14461
Number of Hits to DB: 0
Number of sequences better than 1.0e-01: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 1
Length of database: 30,144,854
Length adjustment: 0
Effective length of query: 1
Effective length of database: 30,144,854
Effective search space: 30144854
Effective search space used: 30144854
X1: 8 (15.9 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 8 (16.4 bits)
S2: 14 (28.2 bits)
Command: echo sequence | /home/proch/blast/bin/blastall -d /home/proch/blast/db/454AllContigs.fna -p blastn -e 0.1 -m 0